Publications

  1. Von Zuben Perotti LE, Viana FAC. Anatomically-guided deep learning for left ventricle geometry generation with uncertainty quantification based on short-axis MR images. Engineering Applications of Artificial Intelligence, Vol. 121, pp. 106012, 2023. DOI: https://doi.org/10.1016/j.engappai.2023.106012.
  2. Ogiermann D, Perotti LE, Balzani D. A Simple and Efficient Adaptive Time Stepping Technique for Low-Order Operator Splitting Schemes Applied to Cardiac Electrophysiology. International Journal for Numerical Methods in Biomedical Engineering, Vol. 39, Issue 2, pp. e3670, 2023. DOI: https://doi.org/10.1002/cnm.3670.
  3. Manero AC, Sparkman J, Dombrowski M, Smith P, Senthil P, Smith S, Rivera V, Chi A. Evolving 3D-Printing Strategies for Structural and Cosmetic Components in Upper Limb Prosthesis. Prosthesis. 2023, 5(1), 167-181. https://www.mdpi.com/2673-1592/5/1/13
  4. Aboutalebianaraki N, Zeblisky P, Sarker MD, Jeyaranjan A, Sakthivel TS, Fu Y, Lucchi J, Baudelet M, Seal S, Kean TJ, Razavi M, An osteogenic magnesium alloy with improved corrosion resistance, antibacterial, and mechanical properties for orthopedic applications, Journal of Biomedical Materials Research Part A 111 (2023) 556–574;1–19, DOI: 10.1002/jbm.a.37476.
  5. Motameni A, Cardaklı IS, Guruz R, Alshemary AZ, Razavi M, Farukoglu OC, Bioglass-polymer composite scaffolds for bone tissue regeneration: a review of current trends, International Journal of Polymeric Materials and Polymeric Biomaterials 2023, 1-20, DOI: 10.1080/00914037.2023.2186864.
  6. Kermanshahi FE, Baheiraei N, Razavi M, Roshanbinfar K, Imani R, Jalilinejad N, Potential of graphene-based nanomaterials for cardiac tissue engineering, Journal of Materials Chemistry B 2023, DOI: 10.1039/d3tb00654a.
  7. Khoury AM, Golubev V, Kassab AJ, and Diov EA, Pharmacokinetic Parameter Identification using a Meshless Method Approach for Transdermal Drug Delivery, Engineering Analysis with Boundary Elements, (2023), Vol. 150, pp. 94–102. https://doi.org/10.1016/j.enganabound.2023.02.010  
  8. Beggs K, Kassab AJ, Divo EA. A Meshless Multiscale Method for Simulating Hemodynamics, Engineering Analysis with Boundary Elements, (2023), Vol. 150, pp. 167-179. https://doi.org/10.1016/j.enganabound.2023.01.032
  9. Das A, Hameed M, Prather R, Farias M, Divo E, Kassab A, Nykanen D, DeCampli W. In-silico and In-vitro Analysis of the Novel Hybrid Comprehensive Stage II         Operation for Single Ventricle Circulation, Bioengineering, Vol. 10, No. 2, pp. 135; 2023 https://doi.org/10.3390/bioengineering10020135.  
  10. Giannuzzi LA, Colletta M, Yu Y, Kourkoutis LF, Iams AD, Beggs K, Kassab AJ. Cryo-EXLO Manipulation of FIB Specimens for Cryo-TEM, (2022),  Microscopy and Microanalysis,  Volume 29, Issue 1, February 2023, Pages 145–154, https://doi.org/10.1093/micmic/ozac029  
  11. Hossain MSB, Guo Z, Choi H. Estimation of Lower Extremity Joint Moments and 3D Ground Reaction Forces Using IMU Sensors in Multiple Walking Conditions: A Deep Learning Approach. IEEE J Biomed Health Inform. 2023 Jun;27(6):2829-2840. doi: 10.1109/JBHI.2023.3262164. Epub 2023 Jun 5.
  12. Takai A, Fu Q, Doibata Y, Lisi G, Tsuchiya T, Mojtahedi K, Yoshioka T, Kawato M, Morimoto J, Santello M. Learning acquisition of consistent leader-follower relationships depends on implicit haptic interactions. Sci Rep. 2023 Mar 1;13(1):3476. doi: 10.1038/s41598-023-29722-6.
  13. Smith MD, Hooks K, Santello M, Fu Q. Distinct adaptation processes underlie multidigit force coordination for dexterous manipulation. Neurophysiol. 2023 Feb 1;129(2):380-391. doi: 10.1152/jn.00329.2022. Epub 2023 Jan 11. PMID: 36629326
  14. Cruz MA, Gonzalez Y, Vélez Toro JA, Karimzadeh M, Rubbo A, Morris L, Medam R, Splawn T, Archer M, Fernandes RJ, Dennis JE, Kean TJ. Micronutrient optimization for tissue engineered articular cartilage production of type II collagen. Front Bioeng Biotechnol. 2023 Jun 6;11:1179332. doi: 10.3389/fbioe.2023.1179332. eCollection 2023.
  15. Wei F, Tuong ZK, Omer M, Ngo C, Asiatico J, Kinzel M, Pugazhendhi AS, Khaled AR, Ghosh R, Coathup M. A novel multifunctional radioprotective strategy using P7C3 as a countermeasure against ionizing radiation-induced bone loss. Bone Res.  2023 Jun 29;11(1):34. doi: 10.1038/s41413-023-00273-w.
  16. Erkilinc M, Coathup M, Liska MG, Lovejoy J. Can placement of a hook at the upper instrumented level decrease the proximal junctional kyphosis risk in adolescent idiopathic scoliosis? Eur Spine J. 2023 Jun 7. doi: 10.1007/s00586-023-07803-4. 
  17. Welsh C, Hull P, Meckmongkol T, Mumith A, Lovejoy J, Giangarra C, Coathup M. Osseointegration reduces aseptic loosening of primary distal femoral implants in pediatric and adolescent osteosarcoma patients: a retrospective clinical and radiographic study. Eur J Orthop Surg Traumatol. 2023 May 29. doi: 10.1007/s00590-023-03590-2. 
  18. Babu B, Pawar S, Mittal A, Kolanthai E, Neal CJ, Coathup M, Seal S. Nanotechnology enabled radioprotectants to reduce space radiation-induced reactive oxidative species. Wiley Interdiscip Rev Nanomed Nanobiotechnol. 2023 May 16:e1896. doi: 10.1002/wnan.1896.
  19. Neal CJ, Kolanthai E, Wei F, Coathup M, Seal S. Surface chemistry of biologically active reducible oxide nanozymes. Adv Mater. 2023 Mar 31:31:e2211261. doi: 10.1002/adma.202211261.
  20. Omer M, Ngo C, Ali H, Orlovskaya N, Cheong VS, Ballesteros A, Garner MT, Wynn A, Martyniak K, Wei F, Collins BE, Yarmolenko SN, Asiatico J, Kinzel M, Ghosh R, Meckmongkol T, Calder A, Dahir N, Gilberston T, Sankar J, Coathup M. The effect of omega-9 on bone viscoelasticity and strength in an ovariectomized diet-fed murine model. Nutrients, Feb 28;15(5):1209. doi: 10.3390/nu15051209. 2023.
  21. Caldwell M, Hughes M, Wei F, Ngo C, Pascua R, Sindu Pugazhendhi A, Coathup M. The promising applications of D-amino acids in periprosthetic joint infection. Bone Research, Mar 10;11(1):14, 2023. doi: 10.1038/s41413-023-00254-z 2023.
  22. Wei F, Neal CJ, Sakthivel TS, Fu Y, Omer M, Adhikary A, Ward S, Ta KM, Moxon S, Molinari M, Asiatico J, Kinzel M, Yarmolenko SM, Cheong VS, Orlovskaya N, Ghosh R, Seal S, Coathup M. A novel approach for the prevention of ionizing radiation-induced bone loss using a designer multifunctional cerium oxide nanozyme. Bioactive Materials.Mar; 21: 547–565, 10.1016/j.bioactmat.2022.09.011, 2023
  23. Fox CR, Kedarinath K, Neal CJ, Sheiber J, Kolanthai E, Kumar U, Drake C, Seal S, Parks GD. Broad-Spectrum, Potent, and Durable Ceria Nanoparticles Inactivate RNA Virus Infectivity by Targeting Virion Surfaces and Disrupting Virus-Receptor Interactions. Molecules. 2023 Jul 4;28(13):5190. doi: 10.3390/molecules28135190.
  24. Banerjee T, Gosai A, Yousefi N, Garibay OO, Seal S, Balasubramanian G.J. Examining sialic acid derivatives as potential inhibitors of SARS-CoV-2 spike protein receptor binding domain. Biomol Struct Dyn. 2023 Jul 9:1-17. doi: 10.1080/07391102.2023.2234044.
  25. Wallbank AM, Vaughn AE, Niemiec S, Bilodeaux J, Lehmann T, Knudsen L, Kolanthai E, Seal S, Zgheib C, Nozik E, Liechty KW, Smith BJ. CNP-miR146a improves outcomes in a two-hit acute- and ventilator-induced lung injury model. Nanomedicine. 2023 Jun;50:102679. doi: 10.1016/j.nano.2023.102679. Epub 2023 Apr 26.
  26. Yousefi N, Yazdani-Jahromi M, Tayebi A, Kolanthai E, Neal CJ, Banerjee T, Gosai A, Balasubramanian G, Seal S, Ozmen Garibay O. Binding Site-AugmentedDTA: enabling a next-generation pipeline for interpretable prediction models in drug repurposing. Brief Bioinform. 2023 May 19;24(3):bbad136. doi: 10.1093/bib/bbad136.
  27. Daré RG, Kolanthai E, Neal CJ, Fu Y, Seal S, Nakamura CV, Lautenschlager SOS. Cerium Oxide Nanoparticles Conjugated with Tannic Acid Prevent UVB-Induced Oxidative Stress in Fibroblasts: Evidence of a Promising Anti-Photodamage Agent. Antioxidants (Basel). 2023 Jan 12;12(1):190. doi: 10.3390/antiox12010190.
  28. Wei F, Flowerdew K, Kinzel M, Perotti LE, Asiatico J, Omer M, Hovell C, Reumers V, Coathup MJ. Changes in interstitial fluid flow, mass transport and the bone cell response in microgravity and normogravity. Bone Research, Vol. 10, Issue 1, pp. 1-19, 2022. DOI: https://doi.org/10.1038/s41413-022-00234-9.
  29. Dharmavaram S, Wan X, Perotti LE. A Lagrangian Thin-Shell Finite Element Method for Interacting Particles on Fluid Membranes. Membranes, Vol. 12, Issue 10, pp. 960, 2022. DOI: https://doi.org/10.3390/membranes12100960.
  30. Manero AC, McLinden SL, Sparkman J, Oskarsson B. Evaluating surface EMG control of motorized wheelchairs for amyotrophic lateral sclerosis patients. Journal of NeuroEngineering and Rehabilitation.  19, Article number: 88 (2022)  https://jneuroengrehab.biomedcentral.com/articles/10.1186/s12984-022-01066-8
  31. Aboutalebianaraki N, Neal CJ, Seal S, Razavi M, Biodegradable Mg-Sc-Sr alloy improves osteogenesis and angiogenesis to accelerate bone defect restoration, Journal of Functional Biomaterials (Special Issue “Feature Papers in Bone Biomaterials”), 13 (2022) 261, DOI: 10.3390/jfb13040261.
  32. Malekmohammadi S, Ur Rehman MR, Samadian H, Zarebkohan A, García-Fernández A, Kokil GR, Fatemeh Sharifi, Esmaeili J, Bhia M, Razavi M, Bodaghi M, Kumeria T, Martínez-Máñez R, Nonordered Dendritic Mesoporous Silica Nanoparticles as Promising Platforms for Advanced Methods of Diagnosis and Therapies, Materials Today Chemistry 26 (2022) 101144, DOI: 10.1016/j.mtchem.2022.101144.
  33. Pal S, Steiner M, Kassab AJ, Pabian P, Golden A, Ross EA. An Experiential Learning Based Design Program in Rehabilitation Engineering, Biomed Eng Education (2022). https://doi.org/10.1007/s43683-022-00091-2 
  34. Hossain MSB, Dranetz J, Choi H, Guo Z. DeepBBWAE-Net: A CNN-RNN Based Deep SuperLearner for Estimating Lower Extremity Sagittal Plane Joint Kinematics Using Shoe-Mounted IMU Sensors in Daily Living. IEEE J Biomed Health Inform. 2022 Aug;26(8):3906-3917. doi: 10.1109/JBHI.2022.3165383. Epub 2022 Aug 11.
  35. Yu S, Huang TH, Di Lallo A, Zhang S, Wang T, Fu Q, Su H. Bio-inspired design of a self-aligning, lightweight, and highly-compliant cable-driven knee exoskeleton. Front Hum Neurosci. 2022 Nov 7;16:1018160. doi: 10.3389/fnhum.2022.1018160. eCollection 2022.
  36. Gonzalez M, Su H, Fu Q. Age-Dependent Upper Limb Myoelectric Control Capability in Typically Developing Children. IEEE Trans Neural Syst Rehabil Eng. 2022;30:1009-1018. doi: 10.1109/TNSRE.2022.3166800. Epub 2022 Apr 21.
  37. Mojtahedi K, Kiani K, Santello M, Fu Q. Inter-personal motor interaction is facilitated by hand pairing. Sci Rep. 2022 Jan 11;12(1):545. doi: 10.1038/s41598-021-04595-9.
  38. Pan RL, Martyniak K, Karimzadeh M, Gelikman DG, DeVries J, Sutter K, Coathup M, Razavi M, Sawh-Martinez R, Kean TJ. Systematic review on the application of 3D-bioprinting technology in orthoregeneration: current achievements and open challenges. J Exp Orthop. 2022 Sep 19;9(1):95. doi: 10.1186/s40634-022-00518-3.
  39. Martyniak K, Lokshina A, Cruz MA, Karimzadeh M, Kemp R, Kean TJ. Biomaterial composition and stiffness as decisive properties of 3D bioprinted constructs for type II collagen stimulation. Acta Biomater. 2022 Oct 15;152:221-234. doi: 10.1016/j.actbio.2022.08.058. Epub 2022 Aug 29.
  40. Kean TJ. Commentary: Systematic review on the application of 3D-bioprinting technology in orthoregeneration: current achievements and open challenges. Journal of Orthopedics and Orthopedic Surgery, Dec 19, 2022 https://doi.org/10.29245/2767-5130/2023/1.1172
  41. Panarello AP, Seavey CE, Doshi M, Dickerson AK, Kean TJ, Willenberg BJ. Transforming Capillary Alginate Gel (Capgel) into New 3D-Printing Biomaterial Inks. Gels. 2022 Jun 14;8(6):376. doi: 10.3390/gels8060376.
  42. Truong RD, Bernier MA, Dennis JE, Kean TJ. Synoviocyte-Derived Extracellular Matrix and bFGF Speed Human Chondrocyte Proliferation While Maintaining Differentiation Potential. Front Bioeng Biotechnol. 2022 May 24;10:825005. doi: 10.3389/fbioe.2022.825005. eCollection 2022.
  43. Shultz LR, Preradovic K, Ghimire S, Hadley HM, Xie S, Kashyap V, Beazley MJ, Crawford KE, Liu F, Mukhopadhyay K, Jurca T. Nickel foam supported porous copper oxide catalysts with noble metal-like activity for aqueous phase reactions. Catal Sci Technol. 2022 Jun 21;12:3804-3816. doi: 10.1039/d1cy02313f. Epub 2022 Apr 1.
  44. Nierenberg D, Flores O, Fox D, Sip YYL, Finn CM, Ghozlan H, Cox A, Coathup M, McKinstry KK, Zhai L, Khaled AR. Macromolecules Absorbed from Influenza Infection-Based Sera Modulate the Cellular Uptake of Polymeric Nanoparticles. Biomimetics (Basel). 2022 Nov 30;7(4):219. doi: 10.3390/biomimetics7040219.
  45. Bayat N, Davey DD, Coathup MJ, Park J-H. White Blood Cell Classification Using Multi-Attention Data Augmentation and Regularization. Big Data Cogn. Comput. 2022, 6(4), 122;https://doi.org/10.3390/bdcc6040122
  46. Omer M, Ali H, Orlovskaya N, Ballesteros A, Cheong V, Martyniak K, Wei F, Collins B, Yarmolenko S, Asiatico J, Kinzel M, Ngo C, Sankar J, Calder A, Gilbertson T, Meckmongkol T, Ghosh R, Coathup MJ. Omega-9 Modifies Viscoelasticity and Augments Bone Strength and Architecture in a High-Fat Diet-Fed Murine Model. (2022) Nutrients. 14(15), 3165. doi: 10.3390/nu14153165
  47. Manero A, Crawford K, Prock-Gibbs H, Shah N, Gandi D, Coathup MJ. Improving disease prevention, diagnosis, and treatment using novel bionic technologies. Bioengineering and Translational Medicine, 2022 Jun 21;8(1):e10359. https://doi.org/10.1002/btm2.10359
  48. Vishnu J, Manivasagam G, Mantovani D, Udduttula A, Coathup M, Popat KC, Ren P-G, Prashanth KG. Balloon expandible coronary stent materials: a systematic review focused on clinical success. In vitro models. 2022 https://doi.org/10.1007/s44164-022-00010-3
  49. El Ghzaoui C, Neal CJ, Kolanthai E, Fu Y, Kumar U, Hu J, Zgheib C, Liechty KW, Seal S. Assessing the bio-stability of microRNA-146a conjugated nanoparticles via electroanalysis. Nanoscale Adv. 2022 Nov 15;5(1):191-207. doi: 10.1039/d2na00600f. eCollection 2022 Dec 20.
  50. Fu Y, Kolanthai E, Neal CJ, Kumar U, Zgheib C, Liechty KW, Seal S. Engineered Faceted Cerium Oxide Nanoparticles for Therapeutic miRNA Delivery. Nanomaterials (Basel). 2022 Dec 9;12(24):4389. doi: 10.3390/nano12244389.
  51. Shin CS, Veettil RA, Sakthivel TS, Adumbumkulath A, Lee R, Zaheer M, Kolanthai E, Seal S, Acharya G. Noninvasive Delivery of Self-Regenerating Cerium Oxide Nanoparticles to Modulate Oxidative Stress in the Retina. ACS Appl Bio Mater. 2022 Dec 19;5(12):5816-5825. doi: 10.1021/acsabm.2c00809. Epub 2022 Nov 28.
  52. Kumar U, Fox CR, Kolanthai E, Neal CJ, Kedarinath K, Fu Y, Marcelo E, Babu B, Parks GD, Seal S. Potent Inactivation of Human Respiratory Viruses Including SARS-CoV-2 by a Photoactivated Self-Cleaning Regenerative Antiviral Coating. ACS Appl Mater Interfaces. 2022 Sep 14;14(36):40659-40673. doi: 10.1021/acsami.2c11653. Epub 2022 Aug 25.
  53. Kumar U, Fox CR, Feit C, Kolanthai E, Sheiber J, Fu Y, Singh S, Banerjee P, Parks GD, Seal S. ALD based nanostructured zinc oxide coated antiviral silk fabric. RSC Adv. 2022 Jul 4;12(30):19327-19339. doi: 10.1039/d2ra02653h. eCollection 2022 Jun 29.
  54. Yazdani-Jahromi M, Yousefi N, Tayebi A, Kolanthai E, Neal CJ, Seal S, Garibay OO. AttentionSiteDTI: an interpretable graph-based model for drug-target interaction prediction using NLP sentence-level relation classification. Brief Bioinform. 2022 Jul 18;23(4):bbac272. doi: 10.1093/bib/bbac272.
  55. Kolanthai E, Neal CJ, Kumar U, Fu Y, Seal S. Antiviral nanopharmaceuticals: Engineered surface interactions and virus-selective activity. Wiley Interdiscip Rev Nanomed Nanobiotechnol. 2022 Sep;14(5):e1823. doi: 10.1002/wnan.1823. Epub 2022 Jun 13.
  56. Tayebi A, Yousefi N, Yazdani-Jahromi M, Kolanthai E, Neal CJ, Seal S, Garibay OO. UnbiasedDTI: Mitigating Real-World Bias of Drug-Target Interaction Prediction by Using Deep Ensemble-Balanced Learning. Molecules. 2022 May 6;27(9):2980. doi: 10.3390/molecules27092980.